Immunohistochemistry - In Situ Hybridization  
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Immunohistochemistry - In Situ Hybridization



Immunohistochemistry


Immunohistochemistry is a technique for identifying cellular or tissue constituents (antigens)
by means of antigen-antibody interactions, the site of antibody binding being identified
either by direct labelling of the antibody, or by use of a secondary labelling method.

In Situ Hybridization techniques allow the demonstration of specific nucleic
acid sequences (genes) in their cellular environment.

Above: Human Papillomavirus DNA demonstrated by In Situ Hybridisation (pink)
in epithelial cells identified by indirect immunofluorescence using antibody against cytokeratin (green)



FISH, Fluorescent In Situ Hybridization In Situ Hybridization, Chromosome1 In Situ Hybridization, HHV8 FISH, Fluorescent In Situ Hybridization, HPV


Immunohistochemistry Protocols Immunohistochemistry Protocols (Web Links)

In Situ Hybridization Protocols (Web Links)

Discuss Immunohistochemistry & In Situ Hybridization

Exploring the functional neuroanatomy of neuronal nicotinic acetylcholine receptors - Immunolabelling Methods


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Immunofluorescence
ImmunohistochemistryMultiple immunofluorescence labelling of formalin-fixed paraffin-embedded (FFPE) tissue

Abstract

Background

Investigating the expression of candidate genes in tissue samples usually involves either immunohistochemical labelling of formalin-fixed paraffin-embedded (FFPE) sections or immunofluorescence labelling of cryosections. Although both of these methods provide essential data, both have important limitations as research tools. Consequently, there is a demand in the research community to be able to perform routine, high quality immunofluorescence labelling of FFPE tissues.

Results

We present here a robust optimised method for high resolution immunofluorescence labelling of FFPE tissues, which involves the combination of antigen retrieval, indirect immunofluorescence and confocal laser scanning microscopy. We demonstrate the utility of this method with examples of immunofluorescence labelling of human kidney, human breast and a tissue microarray of invasive human breast cancers. Finally, we demonstrate that stained slides can be stored in the short term at 4°C or in the longer term at -20°C prior to images being collected. This approach has the potential to unlock a large in vivo database for immunofluorescence investigations and has the major advantages over immunohistochemistry in that it provides higher resolution imaging of antigen localization and the ability to label multiple antigens simultaneously.

Conclusions

This method provides a link between the cell biology and pathology communities. For the cell biologist, it will enable them to utilise the vast archive of pathology specimens to advance their in vitro data into in vivo samples, in particular archival material and tissue microarrays. For the pathologist, it will enable them to utilise multiple antibodies on a single section to characterise particular cell populations or to test multiple biomarkers in limited samples and define with greater accuracy cellular heterogeneity in tissue samples.

Posted by admin on Monday, April 14 @ 10:44:46 CEST (419 reads)
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CD133
ImmunohistochemistryExpression of the "stem cell marker" CD133 in pancreas and pancreatic ductal adenocarcinomas

Abstract

Background

It has been suggested that a small population of cells with unique self-renewal properties and malignant potential exists in solid tumors. Such "cancer stem cells" have been isolated by flow cytometry, followed by xenograft studies of their tumor-initiating properties. A frequently used sorting marker in these experiments is the cell surface protein CD133 (prominin-1). The aim of this work was to examine the distribution of CD133 in pancreatic exocrine cancer.

Methods

Fifty-one cases of pancreatic ductal adenocarcinomas were clinically and histopathologically evaluated, and immunohistochemically investigated for expression of CD133, cytokeratin 19 and chromogranin A. The results were interpreted on the background of CD133 expression in normal pancreas and other normal and malignant human tissues.

Results

CD133 positivity could not be related to a specific embryonic layer of organ origin and was seen mainly at the apical/endoluminal surface of non-squamous, glandular epithelia and of malignant cells in ductal arrangement. Cytoplasmic CD133 staining was observed in some non-epithelial malignancies. In the pancreas, we found CD133 expressed on the apical membrane of ductal cells. In a small subset of ductal cells and in cells in centroacinar position, we also observed expression in the cytoplasm. Pancreatic ductal adenocarcinomas showed a varying degree of apical cell surface CD133 expression, and cytoplasmic staining in a few tumor cells was noted. There was no correlation between the level of CD133 expression and patient survival.

Conclusions

Neither in the pancreas nor in the other investigated organs can CD133 membrane expression alone be a criterion for "stemness". However, there was an interesting difference in subcellular localization with a minor cell population in normal and malignant pancreatic tissue showing cytoplasmic expression. Moreover, since CD133 was expressed in shed ductal cells of pancreatic tumors and was found on the surface of tumor cells in vessels, this molecule may have a potential as clinical marker in patients suffering from pancreatic cancer.

Posted by admin on Tuesday, March 25 @ 23:05:31 CET (309 reads)
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Autofluorescence
ImmunohistochemistryAutofluorescence: Causes and Cures

This document from Wright Cell Imaging Facility, Toronto Western Research Institute, is a summary of information from the Confocal listserver archives, Cytometry Archives and the Histonet archives.

"What we most often mean by “autofluorescence” is “natural fluorescence” or “fixative-induced fluorescence”. The emission spectra of natural fluorescence and fixation-induced fluorescence is very broad compared to the spectra of the dyes, probes and proteins we are interested in, making it difficult to separated wanted from unwanted fluorescence by traditional filtering methods"

Autofluorescence: Causes and Cures (pdf)

Posted by admin on Wednesday, March 19 @ 11:00:06 CET (343 reads)
(comments? | Score: 5)
EnzMet (SISH)
In Situ HybridizationReview Paper Describes Development and Use of New Enzyme Metallography (EnzMetTM) Reagent for In Situ Hybridization

Nanoprobes, Incorporated has developed a new system for super-sensitive, high-resolution detection for use in in situ hybridization (ISH) and immunohistochemistry (IHC). The new process uses an enzyme-linked probe to deposit metal from solution at a target site; this provides a dense, punctate, high resolution black stain which is readily distinguished from other commonly used stains. This new detection method, termed "Enzyme Metallography" (EnzMetTM) has several important advantages for pathology and tissue study. It is visualized in the conventional brightfield light microscope, and hence does not require the use of fluorescent optics or dark adaptation on the part of the user. It provides a permanent record, with no fading or photobleaching; and it can visualize single copies of even non-amplified genes.

The development of this method and its application to HER2 gene amplification in breast cancer are described in a review in the August issue of Human Pathology. Nanoprobes recently signed a deal with Ventana Medical Systems, Incorporated, for commercial development and use of this reagent in their automated slide staining instruments. As a result, the first commercial product has now been introduced in Europe; it is called SISH (Silver In Situ Hybridization). Introduction of SISH in the United States is pending FDA approval. In addition, Nanoprobes will shortly introduce a commercial EnzMetTM formulation optimized for research applications and non-automated staining.

[Enzyme Metallography: schematic and comparison with DAB (74k)]

Reference:

  • Powell, R. D.; Pettay, J. D.; Powell, W. C.; Roche, P. C.; Grogan, T. M.; Hainfeld, J. F., and Tubbs, R. R.: Metallographic in situ hybridization. Hum. Pathol., 38, 1145-1159 (2007). Article (pdf)


Posted by admin on Monday, December 03 @ 15:11:03 CET (1074 reads)
(comments? | Score: 0)
Tyramide Signal Amplification
ImmunohistochemistryTyramide Signal Amplification™ (TSA) is an patented technology developed by PerkinElmer scientists that amplifies both chromogenic and Fluorescent signals in standard immunohistochemistry and in situ hybridization protocols, resulting in a significant increase in sensitivity, without loss of resolution or increase in background. Because TSA is a signal amplification technology, it eliminates the target amplification (PCR) sometimes utilized in in situ when low or single copy genes are present. By using TSA in immunohistochemistry applications, unamplified detection levels can be maintained while utilizing up to 1,000-fold less primary antibody.

Detection of p53 mRNA in Lung Tissue. Digoxigenin-labeled p53 RNA probes were hybridized to paraffin-embedded lung tissue. Comparison shows (A) standard digoxigenin detection with alkaline phophatase/BCIP-NBT (60 minute substrate incubation), and (B) TSA Plus with alkaline phosphatase/BCIP-NBT (15 minute substrate incubation).

The portfolio of TSA products have recently been expanded with the introduction of TSA Plus, a completely biotin-free system for chromogenic detection, and the TSA Cyanine 5 System, which combines the high fluorescence of cyanine dyes with the detection sensitivity of TSA technology. The new Cyanine 5 System join existing TSA kits containing other dyes, including Cyanine 3, thus offering multi-color detection capabilities in multiple-labeling applications

Biotin-Free TSA plus brings enhanced sensitivity to existing DIG labeling protocols.

Read more about Tyramide Signal Amplification™ here

Posted by admin on Friday, November 30 @ 10:46:24 CET (683 reads)
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Modern Pathology

·Immunohistochemical detection of XIAP and p63 in adenomatous hyperplasia, atypical adenomatous hyperplasia, bronchioloalveolar carcinoma and well-differentiated adenocarcinoma
·Nuclear to non-nuclear Pmel17/gp100 expression (HMB45 staining) as a discriminator between benign and malignant melanocytic lesions
·Biomarker (ProExTM C, p16INK4A, and MiB-1) distinction of high-grade squamous intraepithelial lesion from its mimics
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·Cadherin-17 is a useful diagnostic marker for adenocarcinomas of the digestive system
·Immunophenotyping of serous carcinoma of the female genital tract
·Immunohistochemistry for human concentrative nucleoside transporter 3 protein predicts fludarabine sensitivity in chronic lymphocytic leukemia

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Forums
Last 20 Forum Messages

Temperature settings
Last post by JR in General In Situ Hybridization on Jul 09, 2008 at 03:00:56

osmotic sensitivity of nuclei?
Last post by gula in General In Situ Hybridization on Jul 08, 2008 at 18:05:49

mRNA detection using DIG labelled DNA probes
Last post by mini in General In Situ Hybridization on Jul 07, 2008 at 18:06:15

1.MilliQ or DEPC 2.-40 or -80 3.RNAseZap or SDS/H2O2
Last post by TML in General In Situ Hybridization on Jul 07, 2008 at 04:02:30

serum blocking solution
Last post by Carl in General Immunohistochemistry on Jul 05, 2008 at 16:32:25

Hydrophobic barrier pen?
Last post by Ania in General Immunohistochemistry on Jul 05, 2008 at 06:00:08

Treatment with DNAse before ISH
Last post by eva in General In Situ Hybridization on Jul 03, 2008 at 21:35:35

Edge artefact staining
Last post by ole in General Immunohistochemistry on Jul 02, 2008 at 21:55:15

Vectashield & its uses
Last post by Carl in General Immunohistochemistry on Jun 27, 2008 at 22:19:52

Fluorescence mounting medium
Last post by Carl in General Immunohistochemistry on Jun 25, 2008 at 20:03:35

fish-artefact pictures?
Last post by PaulO in General In Situ Hybridization on Jun 25, 2008 at 01:13:10

Homemade Biotin block solutions
Last post by Carl in General Immunohistochemistry on Jun 23, 2008 at 22:11:34

Beta tubulin subtype III/TUJ1
Last post by Carl in General Immunohistochemistry on Jun 23, 2008 at 21:19:41

HPV in situ crystal formation in ffpe tissue
Last post by Hogne in General In Situ Hybridization on Jun 23, 2008 at 19:41:18

Help please on freezing artefact!!
Last post by excalibur in General Immunohistochemistry on Jun 23, 2008 at 18:16:32

Hepatocyte Antibody expression in human not mice.
Last post by Luisa in General Immunohistochemistry on Jun 20, 2008 at 08:54:48

Antibody penetration in thick brain slices 100um
Last post by Carl in General Immunohistochemistry on Jun 18, 2008 at 19:53:04

Background debris on Elastic Stain
Last post by georgebaily in Automated Immunohistochemistry on Jun 18, 2008 at 06:44:32

Preimmune serum
Last post by Carl in General Immunohistochemistry on Jun 06, 2008 at 21:04:12

Eye, eye
Last post by excalibur in General Immunohistochemistry on Jun 05, 2008 at 15:30:04


[Immunohistochemistry - In Situ Hybridization ]
 
Old Articles
Tuesday, November 13
· Frozen Sections
Friday, November 09
· Immunohistochemistry
Monday, October 29
· Human Protein Atlas
Monday, September 24
· ExactAntigen
Wednesday, May 02
· Phospho-STAT5
Monday, April 30
· TLE1
· Pax-5
Saturday, January 27
· Immunohistochemistry in the Diagnosis of Whipple's disease
Wednesday, January 10
· Update on Immunohistochemistry of Germ Cell Tumors
Sunday, November 05
· Multiple Labeling

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Top10 Links
· 1: Anderson Lab In Situ Hybridization Protocols
· 2: Detection of mRNA by in situ hybridization
· 3: 35S-labeled probe
· 4: DIG-labeled probe
· 5: Detection and amplification of FISH signal
· 6: Chromosome In Situ Hybridization using biotin labeled probes
· 7: In Situ Hybridization
· 8: Chick, mouse, and Xenopus two colour whole mount ISH
· 9: Fluorescence In Situ Hybridization (FISH)
· 10: DAKO Handbook
 
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